Publications

Below are a list of publications co-authored by participants (shown in bold) in the Plant Genomics@MSU REU program. Congratulations to all!!!

   

  1. Liu X, Enright M, Barry CS, Jones AD (2017) Profiling, isolation and structure elucidation of specialized acylsucrose metabolites accumulating in tichomes of Petunia species. Metabolomics 13: http://dx.doi.org/10.1007/s11306-017-1224-9
  2. Busch AWU, WareJoncas Z, Montgomery BL (2017) Tryptophan-rich sensory protein / translocator protein (TSPO) from cyanobacterium Fremyella diplosiphon binds a broad range of functionally relevant tetrapyrroles. Biochemistry 56: 73-84 http://dx.doi.org/10.1021/acs.biochem.6b01019
  3. Ratnayake ND, Theisen C, Walter T, Walker KD (2016) Whole-cell biocatalytic production of variously substituted β-aryl- and β-heteroaryl-β-amino acids, J. Biotechnol. 217, 12-21 http://dx.doi.org/10.1016/j.jbiotec.2015.10.012
  4. Yang JT, Preiser AL, Li Z, Weise SE, Sharkey TD (2016) Triose phosphate use limitation of photosynthesis short-term and long-term effects. Planta 243: 687-698 http://dx.doi.org/10.1007/s00425-015-2436-8 
  5. Fan P, Miller AM, Schilmiller AL, Liu X, Ofner I, Jones AD, Zamir D, Last RL (2016) In vitro reconstruction and analysis of evolutionary variation of the tomato acylsucrose metabolic network. Proceedings of the National Academy of Sciences of the United States of America 113: E239-248 http://dx.doi.org/10.1073/pnas.1517930113 
  6. Lloyd JP, Seddon AE, Moghe GD, Simenc MC, Shiu S-H (2015) Characteristics of plant essential genes allow for within- and between-species prediction of lethal mutant phenotypes. The Plant Cell 27: 2133-2147 http://dx.doi.org/10.1105/tpc.15.00051
  7. Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles. The Plant Journal 83: 1097-1113 http://dx.doi.org/10.1111/tpj.12944
  8. Ning J, Moghe G, Leong B, Kim J, Ofner I, Wang Z, Adams C, Jones AD, Zamir D, Last RL (2015) A feedback insensitive isopropylmalate synthase affects acylsugar composition in cultivated and wild tomato. Plant Physiology 169: 1821-1835 http://dx.doi.org/10.1104/pp.15.00474 
  9. Ghosh B, Westbrook TC, Jones AD (2014) Comparative structural profiling of trichome specialized metabolites in tomato (Solanum lycopersicum) and S. habrochaites: acylsugar profiles revealed by UHPLC/MS and NMR. Metabolomics 10: 496-507 http://dx.doi.org/10.1007/s11306-013-0585-y 
  10. Sharkey TD, Gray DW, Pell HK, Breneman SR, Topper L (2013) Isoprene synthase genes for a monophyletic clade of acyclic terpene synthases in the TPS-B terpene synthase family. Evolution 67: 1026-1040 http://dx.doi.org/10.1111/evo.12013 
  11. Nadakuduti SS, Pollard M, Kosma DK, Allen C, Ohlrogge JB, Barry CS (2012) Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato. Plant Physiology 159: 945-960 http://dx.doi.org/10.1104/pp.112.198374  
  12. Gonzales-Vigil E, Hufnagel DE, Kim J, Last RL, Barry CS (2012) Evolution of TPS20-related terpene synthases influences chemical diversity in the glandular trichomes of the wild tomato relative Solanum habrochaites. Plant Journal 71: 921-935 http://dx.doi.org/10.1111/j.1365-313x.2012.05040.x 
  13. Costigan SE, Warnasooriya SN, Humphries BA, Montgomery BL (2011) Root-localized phytpchrome chromophore synthesis is required for photoregulation of root elongation and impacts root sensitivity to jasmonic acid in Arabidopsis. Plant Physiology 157: 1138 -1150 http://dx.doi.org/10.1104/pp.111.184689
  14. Yang Y, Sage TL, Liu Y, Ahmad TR, Marshall WF, Shiu SH, Froehlich JE, Imre KM, Osteryoung KW (2011) CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 108: 18530-18535 http://dx.doi.org/10.1073/pnas.1106706108 
  15. Wanninayake U, DePorre Y, Ondari M, Walker KD (2011) (S)-Styryl-alpha-alanine used to probe the intermolecular mechanism of an intramolecular MIO-aminomutase. Biochemistry 50: 10082-10090 http://dx.doi.org/10.1021/bi2012299 
  16. Ajjawi I, Coku A, Froehlich JE, Yang Y, Osteryoung KW, Benning C, Last RL (2011) A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis. Plos One 6: e25368 http://dx.doi.org/10.1371/journal.pone.0025368 
  17. Gao JP, Ajjawi I, Manoli A, Sawin A, Xu CC, Froehlich JE, Last RL, Benning C (2009) FATTY ACID DESATURASE4 of Arabidopsis encodes a protein distinct from characterized fatty acid desaturases. Plant Journal 60: 832-839 http://dx.doi.org/10.1111/j.1365-313x.2009.04001.x